IL_4QCN_039
3D structure
- PDB id
- 4QCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA- substrates in the A and P sites. This entry contains the 50S subunit of the first 70S ribosome in the ASU.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4QCN|1|A|U|1072, 4QCN|1|A|A|1173, 4QCN|1|A|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74462.1
- Basepair signature
- cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4QCN|1|A|G|1070
4QCN|1|A|G|1071
4QCN|1|A|U|1072
4QCN|1|A|A|1073
4QCN|1|A|A|1074
4QCN|1|A|A|1075
4QCN|1|A|G|1076
*
4QCN|1|A|C|1170
4QCN|1|A|G|1171
4QCN|1|A|A|1172
4QCN|1|A|A|1173
4QCN|1|A|A|1174
4QCN|1|A|A|1175
4QCN|1|A|U|1176
4QCN|1|A|G|1177
4QCN|1|A|A|1178
4QCN|1|A|U|1179
4QCN|1|A|C|1180
4QCN|1|A|G|1181
4QCN|1|A|G|1182
4QCN|1|A|G|1183
4QCN|1|A|G|1184
4QCN|1|A|C|1185
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain B
- 5S Ribosomal RNA
- Chain E
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L16
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