Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4QCN_0011/A/58:67No text annotation
geometric
HL_7RQB_001
NA
HL_4QCN_0021/A/86:94No text annotation
geometric
HL_7RQB_002
NA
HL_4QCN_0031/A/121:126No text annotation
geometric
HL_7RQB_003
NA
HL_4QCN_0041/A/136:141No text annotation
geometric
HL_7RQB_004
NA
HL_4QCN_0051/A/183:190No text annotation
geometric
HL_7RQB_006
NA
HL_4QCN_0061/A/214:219No text annotation
geometric
HL_7RQB_007
NA
HL_4QCN_0071/A/235:241No text annotation
geometric
HL_7RQB_008
NA
HL_4QCN_0081/A/269:275No text annotation
geometric
HL_5J7L_018
HL_37344.1
HL_4QCN_0091/A/329:336No text annotation
geometric
HL_7RQB_010
NA
HL_4QCN_0101/A/343:347No text annotation
geometric
HL_7RQB_011
NA
HL_4QCN_0111/A/351:359T-loop with unstacked turn
geometric
HL_7RQB_012
NA
HL_4QCN_0121/A/409:419No text annotation
geometric
HL_7RQB_013
NA
HL_4QCN_0131/A/437:444No text annotation
geometric
HL_7RQB_014
NA
HL_4QCN_0141/A/488:493GNRA
geometric
HL_7RQB_015
NA
HL_4QCN_0151/A/513:518GNRA
geometric
HL_7RQB_016
NA
HL_4QCN_0171/A/589:598No text annotation
geometric
HL_7RQB_018
NA
HL_4QCN_0181/A/635:641No text annotation
geometric
HL_7RQB_019
NA
HL_4QCN_0191/A/654:659GNRA
geometric
HL_7RQB_020
NA
HL_4QCN_0201/A/666:672GNRA
geometric
HL_6VMY_001
HL_37824.6
HL_4QCN_0211/A/759:766No text annotation
geometric
HL_7RQB_022
NA
HL_4QCN_0221/A/791:800No text annotation
geometric
HL_7RQB_023
NA
HL_4QCN_0231/A/826:832No text annotation
geometric
HL_7RQB_024
NA
HL_4QCN_0241/A/873:878No text annotation
geometric
HL_7RQB_025
NA
HL_4QCN_0261/A/1000:1007GNRA
geometric
HL_7RQB_027
NA
HL_4QCN_0271/A/1024:1031No text annotation
geometric
HL_7RQB_028
NA
HL_4QCN_0301/A/1268:1273GNRA
geometric
HL_7RQB_032
NA
HL_4QCN_0311/A/1327:1335No text annotation
geometric
HL_7RQB_033
NA
HL_4QCN_0321/A/1370:1376No text annotation
geometric
HL_7RQB_034
NA
HL_4QCN_0331/A/1409:1414GNRA
geometric
HL_7RQB_035
NA
HL_4QCN_0341/A/1435:1444No text annotation
geometric
HL_7RQB_036
NA
HL_4QCN_0351/A/1499:1506No text annotation
geometric
HL_7RQB_037
NA
HL_4QCN_0361/A/1538:1544No text annotation
geometric
HL_7RQB_038
NA
HL_4QCN_0371/A/1612:1615No text annotation
geometric
HL_7RQB_039
NA
HL_4QCN_0381/A/1658:1665No text annotation
geometric
HL_7RQB_040
NA
HL_4QCN_0391/A/1677:1682No text annotation
geometric
HL_7RQB_041
NA
HL_4QCN_0401/A/1738:1743No text annotation
geometric
HL_7RQB_042
NA
HL_4QCN_0411/A/1765:1771No text annotation
geometric
HL_7RQB_043
NA
HL_4QCN_0421/A/1783:1787No text annotation
geometric
HL_7RQB_044
NA
HL_4QCN_0431/A/1808:1818No text annotation
geometric
HL_7RQB_045
NA
HL_4QCN_0441/A/1837:1842GNRA
geometric
HL_7RQB_046
NA
HL_4QCN_0451/A/1895:1900GNRA
geometric
HL_7RQB_047
NA
HL_4QCN_0461/A/1932:1942No text annotation
geometric
HL_5TBW_049
NA
HL_4QCN_0471/A/1971:1979No text annotation
geometric
HL_7RQB_049
NA
HL_4QCN_0481/A/2049:2058No text annotation
geometric
HL_7RQB_050
NA
HL_4QCN_0511/A/2260:2268No text annotation
geometric
HL_4V9F_055
HL_85367.2
HL_4QCN_0521/A/2276:2288No text annotation
geometric
HL_7RQB_054
NA
HL_4QCN_0541/A/2336:2343Pseudoknot geometry
geometric
HL_7RQB_056
NA
HL_4QCN_0551/A/2367:2374No text annotation
geometric
HL_7RQB_057
NA
HL_4QCN_0561/A/2386:2391GNRA
geometric
HL_7RQB_058
NA
HL_4QCN_0571/A/2416:2425No text annotation
geometric
HL_7RQB_059
NA
HL_4QCN_0581/A/2483:2491No text annotation
geometric
HL_7RQB_060
NA
HL_4QCN_0591/A/2540:2547No text annotation
geometric
HL_7RQB_061
NA
HL_4QCN_0601/A/2563:2569No text annotation
geometric
HL_4WF9_058
HL_30068.2
HL_4QCN_0611/A/2606:2611GNRA
geometric
HL_7RQB_063
NA
HL_4QCN_0621/A/2670:2675GNRA
geometric
HL_7RQB_064
NA
HL_4QCN_0631/A/2713:2718No text annotation
geometric
HL_7RQB_065
NA
HL_4QCN_0641/A/2758:2772No text annotation
geometric
HL_7RQB_066
NA
HL_4QCN_0661/A/2829:2837No text annotation
geometric
HL_7RQB_068
NA
HL_4QCN_0671/A/2866:2871GNRA
geometric
HL_7RQB_069
NA
HL_4QCN_0681/B/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_4QCN_0691/B/86:91GNRA
geometric
HL_7RQB_071
NA

Problematic loops

#loop idProblemSequence
HL_4QCN_016No text annotation
HL_4QCN_025No text annotation
HL_4QCN_028No text annotation
HL_4QCN_029No text annotation
HL_4QCN_049UNCG
HL_4QCN_050No text annotation
HL_4QCN_053No text annotation
HL_4QCN_065No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4QCN_0011/A/24:30,
1/A/535:541
Triple sheared with non-canonical cWW
geometric
IL_7RQB_001
NA
IL_4QCN_0021/A/36:37,
1/A/468:470
Single bulged A
geometric
IL_7RQB_002
NA
IL_4QCN_0031/A/42:43,
1/A/461:463
Minor groove platform
geometric
IL_7RQB_003
NA
IL_4QCN_0041/A/80:84,
1/A/96:103
Kink-turn
geometric
IL_7RQB_004
NA
IL_4QCN_0051/A/172:173,
1/A/201:203
Single stack bend
geometric
IL_7RQB_005
NA
IL_4QCN_0061/A/177:183,
1/A/190:197
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_4QCN_0071/A/228:234,
1/A/242:247
7x6 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_007
NA
IL_4QCN_0081/A/291:292,
1/A/392:394
Major groove platform
geometric
IL_7RQB_009
NA
IL_4QCN_0101/A/304:308,
1/A/381:384
tSH-tHW
geometric
IL_7RQB_011
NA
IL_4QCN_0111/A/312:314,
1/A/374:377
Isolated tHS basepair with bulges
geometric
IL_7RQB_012
NA
IL_4QCN_0121/A/317:319,
1/A/367:371
No text annotation
geometric
IL_7RQB_013
NA
IL_4QCN_0131/A/507:510,
1/A/521:534
No text annotation
geometric
IL_7RQB_014
NA
IL_4QCN_0141/A/587:589,
1/A/598:600
No text annotation
geometric
IL_7RQB_015
NA
IL_4QCN_0151/A/629:633,
1/A/643:647
AAA cross-strand stack
geometric
IL_7RQB_016
NA
IL_4QCN_0171/A/719:721,
1/A/853:855
No text annotation
geometric
IL_7RQB_017
NA
IL_4QCN_0181/A/721:725,
1/A/846:853
tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_4QCN_0191/A/744:745,
1/A/810:812
Single bulged A
geometric
IL_7RQB_019
NA
IL_4QCN_0201/A/749:750,
1/A/775:777
Single bulged G
geometric
IL_7RQB_020
NA
IL_4QCN_0211/A/750:754,
1/A/771:775
Triple sheared
geometric
IL_7RQB_021
NA
IL_4QCN_0221/A/785:788,
1/A/803:805
Major groove platform with extra cWW
geometric
IL_7RQB_022
NA
IL_4QCN_0231/A/822:824,
1/A/834:838
Multiple bulged bases
geometric
IL_7RQB_023
NA
IL_4QCN_0241/A/884:885,
1/A/985:987
Single stack bend
geometric
IL_7RQB_024
NA
IL_4QCN_0251/A/891:893,
1/A/976:979
Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4QCN_0261/A/893:897,
1/A/973:976
No text annotation
geometric
IL_7RQB_026
NA
IL_4QCN_0271/A/905:909,
1/A/961:965
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7RQB_027
NA
IL_4QCN_0281/A/909:910,
1/A/959:961
Minor groove platform
geometric
IL_4V9F_034
IL_51454.1
IL_4QCN_0291/A/911:915,
1/A/955:958
C-loop
geometric
IL_7RQB_029
NA
IL_4QCN_0301/A/917:919,
1/A/951:953
Isolated cWS basepair
geometric
IL_4WF9_034
NA
IL_4QCN_0311/A/922:926,
1/A/944:948
No text annotation
IL_4QCN_0331/A/997:999,
1/A/1008:1010
No text annotation
geometric
IL_7RQB_034
NA
IL_4QCN_0341/A/1040:1042,
1/A/1205:1206
Single bulged C
geometric
IL_7RQB_035
NA
IL_4QCN_0351/A/1044:1048,
1/A/1199:1203
UAA/GAN
geometric
IL_7RQB_036
NA
IL_4QCN_0361/A/1050:1057,
1/A/1196:1197
SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_4QCN_0371/A/1057:1059,
1/A/1195:1196
Single bulged U
geometric
IL_7RQB_038
NA
IL_4QCN_0381/A/1064:1070,
1/A/1185:1190
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4QCN_0391/A/1070:1076,
1/A/1170:1185
No text annotation
geometric
IL_7RQB_040
NA
IL_4QCN_0401/A/1077:1080,
1/A/1167:1169
Isolated non-canonical cWW pair
geometric
IL_7RQB_041
NA
IL_4QCN_0411/A/1241:1243,
1/A/1293:1296
Isolated cWS basepair
geometric
IL_7RQB_045
NA
IL_4QCN_0421/A/1247:1251,
1/A/1286:1289
No text annotation
geometric
IL_7RQB_046
NA
IL_4QCN_0431/A/1253:1260,
1/A/1280:1284
Kink-turn
geometric
IL_7RQB_047
NA
IL_4QCN_0441/A/1264:1266,
1/A/1275:1276
Single bulged A
geometric
IL_7RQB_048
NA
IL_4QCN_0451/A/1308:1315,
1/A/2033:2039
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_049
NA
IL_4QCN_0461/A/1356:1359,
1/A/1649:1650
Major groove platform; stack outside cWW
geometric
IL_7RQB_050
NA
IL_4QCN_0471/A/1365:1369,
1/A/1377:1379
C-loop
geometric
IL_7RQB_051
NA
IL_4QCN_0481/A/1397:1401,
1/A/1422:1426
UAA/GAN
geometric
IL_7RQB_052
NA
IL_4QCN_0491/A/1403:1407,
1/A/1416:1420
tSH-tHW-tHS
geometric
IL_7RQB_053
NA
IL_4QCN_0501/A/1461:1462,
1/A/1629:1633
No text annotation
geometric
IL_7RQB_054
NA
IL_4QCN_0511/A/1463:1467,
1/A/1624:1628
UAA/GAN
geometric
IL_7RQB_055
NA
IL_4QCN_0521/A/1479:1481,
1/A/1604:1607
Isolated tWW turn
geometric
IL_7RQB_056
NA
IL_4QCN_0531/A/1483:1486,
1/A/1598:1602
tSH-tHW
geometric
IL_7RQB_057
NA
IL_4QCN_0541/A/1495:1497,
1/A/1509:1510
Single stack bend
geometric
IL_7RQB_058
NA
IL_4QCN_0551/A/1498:1499,
1/A/1506:1508
Single bulged A
geometric
IL_7RQB_059
NA
IL_4QCN_0561/A/1516:1520,
1/A/1566:1569
UAA/GAN
geometric
IL_7RQB_060
NA
IL_4QCN_0571/A/1528:1529,
1/A/1552:1558
No text annotation
geometric
IL_7RQB_061
NA
IL_4QCN_0581/A/1535:1537,
1/A/1545:1546
Single bulged A
geometric
IL_7RQB_062
NA
IL_4QCN_0601/A/1698:1703,
1/A/2026:2028
No text annotation
geometric
IL_7RQB_064
NA
IL_4QCN_0611/A/1710:1712,
1/A/2017:2019
Isolated tWW turn
geometric
IL_7RQB_065
NA
IL_4QCN_0621/A/1713:1716,
1/A/2015:2016
Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_4QCN_0631/A/1716:1721,
1/A/2012:2015
Intercalated tWH
geometric
IL_7RQB_067
NA
IL_4QCN_0641/A/1733:1738,
1/A/1743:1749
tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_4QCN_0651/A/1801:1802,
1/A/2002:2004
Single bulged A
geometric
IL_7RQB_069
NA
IL_4QCN_0661/A/1829:1835,
1/A/1844:1852
Kink-turn related
geometric
IL_7RQB_070
NA
IL_4QCN_0671/A/1868:1871,
1/A/1924:1925
Minor groove platform, major groove intercalation
geometric
IL_7RQB_071
NA
IL_4QCN_0681/A/1872:1873,
1/A/1920:1923
Major groove intercalation
geometric
IL_7RQB_072
NA
IL_4QCN_0691/A/1877:1880,
1/A/1915:1916
Minor groove platform
geometric
IL_7RQB_073
NA
IL_4QCN_0701/A/1882:1886,
1/A/1909:1913
UAA/GAN with extra pair
geometric
IL_7RQB_074
NA
IL_4QCN_0711/A/1887:1891,
1/A/1904:1908
Triple sheared
geometric
IL_7RQB_075
NA
IL_4QCN_0721/A/1955:1956,
1/A/1986:1989
Bulged stacked bases
geometric
IL_7RQB_076
NA
IL_4QCN_0731/A/1956:1967,
1/A/1983:1986
No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_4QCN_0741/A/2072:2074,
1/A/2629:2630
Major groove platform
geometric
IL_7RQB_078
NA
IL_4QCN_0751/A/2076:2079,
1/A/2623:2627
No text annotation
geometric
IL_7RQB_079
NA
IL_4QCN_0761/A/2089:2091,
1/A/2454:2455
Single bulged U
geometric
IL_7RQB_080
NA
IL_4QCN_0771/A/2092:2093,
1/A/2450:2453
Minor groove platform
geometric
IL_7RQB_081
NA
IL_4QCN_0781/A/2103:2105,
1/A/2248:2251
Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_4QCN_0791/A/2107:2109,
1/A/2244:2246
No text annotation
geometric
IL_7RQB_083
NA
IL_4QCN_0851/A/2309:2311,
1/A/2329:2333
Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4QCN_0861/A/2362:2365,
1/A/2376:2379
Double sheared
geometric
IL_7RQB_089
NA
IL_4QCN_0871/A/2413:2415,
1/A/2426:2427
Major groove platform
geometric
IL_7RQB_090
NA
IL_4QCN_0881/A/2465:2466,
1/A/2510:2512
Single stack bend
geometric
IL_7RQB_091
NA
IL_4QCN_0891/A/2466:2467,
1/A/2508:2510
Major groove platform
geometric
IL_7RQB_092
NA
IL_4QCN_0911/A/2471:2473,
1/A/2501:2505
Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_4QCN_0921/A/2478:2482,
1/A/2492:2496
Triple sheared
geometric
IL_7RQB_095
NA
IL_4QCN_0931/A/2519:2520,
1/A/2592:2594
Major groove platform
geometric
IL_7RQB_096
NA
IL_4QCN_0941/A/2522:2524,
1/A/2586:2590
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4QCN_0951/A/2524:2525,
1/A/2583:2586
Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_4QCN_0961/A/2534:2535,
1/A/2552:2555
Major groove platform with intercalation
geometric
IL_7RQB_099
NA
IL_4QCN_0981/A/2603:2604,
1/A/2613:2615
Single bulged A
geometric
IL_7RQB_101
NA
IL_4QCN_0991/A/2648:2652,
1/A/2787:2795
tSH-tHS-tHW
geometric
IL_7RQB_102
NA
IL_4QCN_1001/A/2664:2670,
1/A/2675:2680
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4QCN_1011/A/2692:2696,
1/A/2738:2740
C-loop
geometric
IL_7RQB_104
NA
IL_4QCN_1021/A/2699:2703,
1/A/2731:2735
No text annotation
geometric
IL_7RQB_105
NA
IL_4QCN_1031/A/2707:2708,
1/A/2723:2727
Multiple bulged bases
geometric
IL_7RQB_106
NA
IL_4QCN_1041/A/2750:2755,
1/A/2775:2780
UAA/GAN with extra cWW
geometric
IL_7RQB_107
NA
IL_4QCN_1051/A/2848:2849,
1/A/2888:2890
Major groove intercalation
geometric
IL_5J7L_315
IL_82107.3
IL_4QCN_1061/A/2853:2856,
1/A/2880:2884
No text annotation
geometric
IL_7RQB_109
NA
IL_4QCN_1071/A/2857:2862,
1/A/2875:2879
tHS double platform
geometric
IL_7RQB_110
NA
IL_4QCN_1081/B/17:18,
1/B/65:67
Major groove intercalation
geometric
IL_7RQB_111
NA
IL_4QCN_1091/B/23:28,
1/B/56:60
No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4QCN_1101/B/30:31,
1/B/51:54
Major groove minor groove platform; mini C-loop
geometric
IL_7RQB_113
NA
IL_4QCN_1111/B/34:38,
1/B/44:48
Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_4QCN_1121/B/71:79,
1/B/98:106
Bacterial 5S Loop E
geometric
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_4QCN_009No text annotation
IL_4QCN_032No text annotation
IL_4QCN_059No text annotation
IL_4QCN_080Isolated non-canonical cWW pair
IL_4QCN_081Multiple bulged bases
IL_4QCN_082No text annotation
IL_4QCN_083Kink-turn
IL_4QCN_090Major groove platform with extra pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4QCN_0011/A/730:736,
1/A/820:822,
1/A/838:841
No text annotation
geometric
J3_9DFE_007
J3_64189.2
J3_4QCN_0021/A/745:747,
1/A/779:783,
1/A/807:810
No text annotation
geometric
J3_9DFE_008
J3_44724.7
J3_4QCN_0031/A/1344:1349,
1/A/1671:1673,
1/A/1686:1689
No text annotation
geometric
J3_9DFE_010
J3_32852.6
J3_4QCN_0041/A/1352:1355,
1/A/1651:1657,
1/A/1666:1668
No text annotation
geometric
J3_9DFE_011
J3_71677.1
J3_4QCN_0051/A/2113:2115,
1/A/2218:2222,
1/A/2235:2240
No text annotation
geometric
J3_9DFE_014
J3_89368.5
J3_4QCN_0061/A/2307:2309,
1/A/2333:2335,
1/A/2344:2349
No text annotation
geometric
J3_9DFE_016
J3_61124.2
J3_4QCN_0071/A/2529:2532,
1/A/2557:2559,
1/A/2573:2579
No text annotation
geometric
J3_9DFE_017
J3_32601.5

Problematic loops

#loop idProblemSequence
J3_4QCN_008No text annotation

Coloring options:
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