IL_4QCN_100

3D structure

PDB id

4QCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA- substrates in the A and P sites. This entry contains the 50S subunit of the first 70S ribosome in the ASU.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49493.8

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4QCN|1|A|C|2664
4QCN|1|A|U|2665
4QCN|1|A|A|2666
4QCN|1|A|G|2667
4QCN|1|A|U|2668
4QCN|1|A|A|2669
4QCN|1|A|C|2670
*
4QCN|1|A|G|2675
4QCN|1|A|G|2676
4QCN|1|A|A|2677
4QCN|1|A|C|2678
4QCN|1|A|C|2679
4QCN|1|A|G|2680

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6