IL_4QJH_009

3D structure

PDB id

4QJH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site Ordered at 4.1 A Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.88 Å

Loop

Sequence

GCA*UAGC

Length

7 nucleotides

Bulged bases

4QJH|1|D|A|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4QJH_009 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.2025

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4QJH|1|C|G|13
4QJH|1|C|C|14
4QJH|1|C|A|15
*
4QJH|1|D|U|57
4QJH|1|D|A|58
4QJH|1|D|G|59
4QJH|1|D|C|60

Current chains

Chain C

Twister Ribozyme

Chain D

Twister Ribozyme

Nearby chains

Chain A

Twister Ribozyme

Chain B

Twister Ribozyme