4QJH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4QJH_002 | 1/B/39:48 | T-loop with unstacked turn | geometric HL_7A0S_012 HL_27670.3 | |
| HL_4QJH_004 | 1/D/39:48 | T-loop with unstacked turn | geometric HL_4OJI_002 NA | |
| HL_4QJH_006 | 1/F/39:48 | T-loop with unstacked turn | geometric HL_5J7L_144 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4QJH_001 | 1/A/8:12, 1/B/61:67 | No text annotation | ||
| IL_4QJH_004 | 1/C/8:13, 1/D/60:67 | No text annotation | ||
| IL_4QJH_005 | 1/C/14:15, 1/D/57:59 | No text annotation | ||
| IL_4QJH_010 | 1/E/8:12, 1/F/61:67 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4QJH_002 | No text annotation | ||
| IL_4QJH_003 | Tandem non-canonical cWW pairs | ||
| IL_4QJH_008 | No text annotation | ||
| IL_4QJH_009 | Isolated non-canonical cWW pair | ||
| IL_4QJH_006 | No text annotation | ||
| IL_4QJH_007 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4QJH_006 | 1/A/14:20, 1/B/33:36, 1/B/51:59 | No text annotation | ||
| J3_4QJH_002 | 1/C/15:18, 1/D/35:36, 1/D/51:57 | No text annotation | geometric J3_4QJD_002 J3_36765.1 | |
| J3_4QJH_003 | 1/E/14:18, 1/F/35:36, 1/F/51:59 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4QJH_001 | No text annotation | ||
| J3_4QJH_004 | No text annotation | ||
| J3_4QJH_005 | No text annotation |
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