IL_4QK8_002

3D structure

PDB id

4QK8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGCUUUUUG*CAG

Length

12 nucleotides

Bulged bases

4QK8|1|A|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95942.1

Basepair signature

cWW-L-R-L-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4QK8|1|A|C|31
4QK8|1|A|G|32
4QK8|1|A|C|33
4QK8|1|A|U|34
4QK8|1|A|U|35
4QK8|1|A|U|36
4QK8|1|A|U|37
4QK8|1|A|U|38
4QK8|1|A|G|39
*
4QK8|1|A|C|92
4QK8|1|A|A|93
4QK8|1|A|G|94

Current chains

Chain A

C-di-AMP riboswitch

Nearby chains