4QK8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4QK8_001 | 1/A/13:18 | GNRA | geometric HL_3MOJ_001 HL_37824.5 | |
| HL_4QK8_002 | 1/A/53:59 | No text annotation | geometric HL_3LA5_002 HL_31585.2 | |
| HL_4QK8_003 | 1/A/71:79 | Pseudoknot geometry | geometric HL_6N5P_003 HL_93324.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4QK8_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4QK8_001 | 1/A/26:31, 1/A/94:99 | No text annotation | geometric IL_6N5P_001 IL_55953.3 | |
| IL_4QK8_002 | 1/A/31:39, 1/A/92:94 | Reverse kink-turn related | geometric IL_6N5P_002 IL_38969.1 | |
| IL_4QK8_004 | 1/A/31:40, 1/A/89:94 | No text annotation | geometric IL_6N5P_004 IL_73700.1 | |
| IL_4QK8_003 | 1/A/39:40, 1/A/89:92 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4QK8_001 | 1/A/7:12, 1/A/19:22, 1/A/103:106 | C-di-AMP riboswitch | ||
| J3_4QK8_002 | 1/A/43:48, 1/A/64:67, 1/A/83:86 | C-di-AMP riboswitch |
Problematic loops
No problematic loops
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