3D structure

PDB id
4QVI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of mutant ribosomal protein M218L TthL1 in complex with 80nt 23S RNA from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
1.9 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_92628.1
Basepair signature
cWW-tSH-tWH-tWH-R-R-R-R-R-tSS-cWW
Number of instances in this motif group
5

Unit IDs

4QVI|1|B|G|2124
4QVI|1|B|G|2125
4QVI|1|B|A|2126
4QVI|1|B|G|2127
*
4QVI|1|B|C|2161
4QVI|1|B|G|2162
4QVI|1|B|C|2163
4QVI|1|B|C|2164
4QVI|1|B|G|2165
4QVI|1|B|G|2166
4QVI|1|B|U|2167
4QVI|1|B|G|2168
4QVI|1|B|A|2169
4QVI|1|B|A|2170
4QVI|1|B|A|2171
4QVI|1|B|U|2172
4QVI|1|B|A|2173
4QVI|1|B|C|2174

Current chains

Chain B
fragment of 23S rRNA

Nearby chains

Chain A
50S ribosomal protein L1

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1902 s