Motif IL_92628.1 Version IL_92628.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-6 | 4-5 | 4-16 | 5-16 | 10-15 | 11-14 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5AJ0_138 | 5AJ0 | 0.1872 | 1 | A2 | LSU rRNA | G | 3941 | G | 3942 | A | 3943 | G | 3944 | * | C | 4008 | G | 4009 | C | 4010 | C | 4011 | G | 4012 | G | 4013 | U | 4014 | G | 4015 | A | 4017 | A | 4018 | U | 4019 | A | 4020 | C | 4021 | cWW | tSH | cWW | ntWH | tWH | ||||
| 2 | IL_4QVI_003 | 4QVI | 0.1356 | 1 | B | LSU rRNA | G | 2124 | G | 2125 | A | 2126 | G | 2127 | * | C | 2161 | G | 2162 | C | 2163 | C | 2164 | G | 2165 | G | 2166 | U | 2167 | G | 2168 | A | 2170 | A | 2171 | U | 2172 | A | 2173 | C | 2174 | cWW | tSH | tSs | cWW | tsS | ncsS | tWH | tWH | |
| 3 | IL_1MZP_003 | 1MZP | 0.0000 | 1 | B | fragment of 23S rRNA | G | 20 | G | 21 | A | 22 | G | 23 | * | C | 32 | G | 33 | C | 34 | C | 35 | G | 36 | G | 37 | U | 38 | G | 39 | A | 41 | A | 42 | U | 43 | A | 44 | C | 45 | cWW | tSH | ntSs | cWW | ntsS | ntWH | tWH | ||
| 4 | IL_4V91_105 | 4V91 | 0.1583 | 1 | 1 | LSU rRNA | G | 2466 | G | 2467 | A | 2468 | G | 2469 | * | C | 2476 | G | 2477 | C | 2478 | C | 2479 | G | 2480 | G | 2481 | U | 2482 | G | 2483 | A | 2485 | A | 2486 | U | 2487 | A | 2488 | C | 2489 | cWW | ntSH | tSs | ncWW | tWH | ||||
| 5 | IL_5J7L_329 | 5J7L | 0.7556 | 3 | Kink-turn related | DA | LSU rRNA | G | 2124 | G | 2125 | A | 2126 | G | 2128 | * | C | 2160 | C | 2161 | G | 2162 | A | 2163 | C | 2164 | C | 2165 | U | 2166 | U | 2167 | A | 2169 | A | 2170 | A | 2171 | A | 2173 | C | 2174 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGCCGGUGAAAUAC | 4 |
| GGAGG*CCGACCUUGAAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GCCGGUGAAAUA | 4 |
| GAG*CGACCUUGAAAUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn related (1)
- Basepair signature
- cWW-tSH-tWH-tWH-R-R-R-R-R-tSS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.34 | Max 0.81
Coloring options: