IL_4R0D_007

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

UGCCCU*AGGUGCCA

Length

14 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63059.1

Basepair signature

cWW-cSW-L-R-tHH-L-R-R-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4R0D|1|A|U|125
4R0D|1|A|G|126
4R0D|1|A|C|127
4R0D|1|A|C|128
4R0D|1|A|C|129
4R0D|1|A|U|130
*
4R0D|1|A|A|139
4R0D|1|A|G|140
4R0D|1|A|G|141
4R0D|1|A|U|142
4R0D|1|A|G|143
4R0D|1|A|C|144
4R0D|1|A|C|145
4R0D|1|A|A|146

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains