IL_4TUB_017

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1153

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4TUB|1|QA|G|409
4TUB|1|QA|G|410
4TUB|1|QA|A|411
4TUB|1|QA|A|412
4TUB|1|QA|G|413
4TUB|1|QA|A|414
4TUB|1|QA|A|415
4TUB|1|QA|G|416
*
4TUB|1|QA|U|427
4TUB|1|QA|G|428
4TUB|1|QA|U|429
4TUB|1|QA|A|430
4TUB|1|QA|A|431
4TUB|1|QA|A|432
4TUB|1|QA|C|433

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4