IL_4TUB_083

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4TUB|1|RA|G|977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_083 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3509

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4TUB|1|RA|C|891
4TUB|1|RA|G|892
4TUB|1|RA|C|893
*
4TUB|1|RA|G|976
4TUB|1|RA|G|977
4TUB|1|RA|A|978
4TUB|1|RA|G|979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30