IL_4TUB_093

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_093 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.1045

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4TUB|1|RA|C|1050
4TUB|1|RA|C|1051
4TUB|1|RA|C|1052
4TUB|1|RA|C|1053
4TUB|1|RA|C|1054
4TUB|1|RA|A|1055
4TUB|1|RA|A|1056
4TUB|1|RA|G|1057
*
4TUB|1|RA|C|1196
4TUB|1|RA|G|1197

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20