IL_4TUB_095

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4TUB|1|RA|U|1187, 4TUB|1|RA|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_095 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1433

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4TUB|1|RA|C|1064
4TUB|1|RA|U|1065
4TUB|1|RA|A|1066
4TUB|1|RA|A|1067
4TUB|1|RA|G|1068
4TUB|1|RA|U|1069
4TUB|1|RA|G|1070
*
4TUB|1|RA|C|1185
4TUB|1|RA|U|1186
4TUB|1|RA|U|1187
4TUB|1|RA|A|1188
4TUB|1|RA|A|1189
4TUB|1|RA|G|1190

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13