IL_4TUB_123

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4TUB|1|RA|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_123 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1409

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4TUB|1|RA|C|1733
4TUB|1|RA|G|1734
4TUB|1|RA|U|1735
4TUB|1|RA|A|1736
4TUB|1|RA|A|1737
4TUB|1|RA|C|1738
*
4TUB|1|RA|G|1743
4TUB|1|RA|G|1744
4TUB|1|RA|A|1745
4TUB|1|RA|G|1746
4TUB|1|RA|A|1747
4TUB|1|RA|A|1748
4TUB|1|RA|G|1749

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2