IL_4TUB_125

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4TUB|1|RA|G|1832, 4TUB|1|RA|G|1847, 4TUB|1|RA|U|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_125 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0611

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4TUB|1|RA|U|1829
4TUB|1|RA|G|1830
4TUB|1|RA|C|1831
4TUB|1|RA|G|1832
4TUB|1|RA|A|1833
4TUB|1|RA|A|1834
4TUB|1|RA|C|1835
*
4TUB|1|RA|G|1844
4TUB|1|RA|G|1845
4TUB|1|RA|A|1846
4TUB|1|RA|G|1847
4TUB|1|RA|G|1848
4TUB|1|RA|U|1849
4TUB|1|RA|A|1850
4TUB|1|RA|U|1851
4TUB|1|RA|A|1852

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2