IL_4TUB_129

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_129 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.1816

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4TUB|1|RA|U|1882
4TUB|1|RA|C|1883
4TUB|1|RA|A|1884
4TUB|1|RA|A|1885
4TUB|1|RA|G|1886
*
4TUB|1|RA|C|1909
4TUB|1|RA|G|1910
4TUB|1|RA|A|1911
4TUB|1|RA|A|1912
4TUB|1|RA|G|1913

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2