3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
AUC*GGUUU
Length
8 nucleotides
Bulged bases
4TUB|1|RA|U|2503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUB_149 not in the Motif Atlas
Geometric match to IL_7RQB_094
Geometric discrepancy: 0.1286
The information below is about IL_7RQB_094
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform; mini C-loop
Motif group
IL_92788.2
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
14

Unit IDs

4TUB|1|RA|A|2471
4TUB|1|RA|U|2472
4TUB|1|RA|C|2473
*
4TUB|1|RA|G|2501
4TUB|1|RA|G|2502
4TUB|1|RA|U|2503
4TUB|1|RA|U|2504
4TUB|1|RA|U|2505

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain RQ
50S ribosomal protein L16
Chain Z5
CC-Puro

Coloring options:


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