IL_4TUB_152

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4TUB|1|RA|G|2588, 4TUB|1|RA|A|2589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_152 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0805

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4TUB|1|RA|C|2522
4TUB|1|RA|U|2523
4TUB|1|RA|C|2524
*
4TUB|1|RA|G|2586
4TUB|1|RA|C|2587
4TUB|1|RA|G|2588
4TUB|1|RA|A|2589
4TUB|1|RA|G|2590

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3