IL_4TUB_161

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4TUB|1|RA|A|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_161 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0682

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4TUB|1|RA|G|2750
4TUB|1|RA|A|2751
4TUB|1|RA|U|2752
4TUB|1|RA|A|2753
4TUB|1|RA|A|2754
4TUB|1|RA|C|2755
*
4TUB|1|RA|G|2775
4TUB|1|RA|G|2776
4TUB|1|RA|A|2777
4TUB|1|RA|A|2778
4TUB|1|RA|G|2779
4TUB|1|RA|C|2780

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13