IL_4TUB_289

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_289 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0984

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4TUB|1|YA|A|1469
4TUB|1|YA|G|1470
4TUB|1|YA|A|1471
4TUB|1|YA|A|1472
4TUB|1|YA|G|1473
*
4TUB|1|YA|U|1520
4TUB|1|YA|G|1521
4TUB|1|YA|G|1522
4TUB|1|YA|U|1523

Current chains

Chain YA

23S rRNA

Nearby chains