IL_4TUB_297

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4TUB|1|YA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_297 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1168

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4TUB|1|YA|C|1686
4TUB|1|YA|G|1687
4TUB|1|YA|U|1688
4TUB|1|YA|A|1689
4TUB|1|YA|A|1690
4TUB|1|YA|C|1691
*
4TUB|1|YA|G|1696
4TUB|1|YA|G|1697
4TUB|1|YA|A|1698
4TUB|1|YA|G|1699
4TUB|1|YA|A|1700
4TUB|1|YA|A|1701
4TUB|1|YA|G|1702

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2