3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4TUB|1|YA|A|1938, 4TUB|1|YA|U|1944
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUB_306 not in the Motif Atlas
Geometric match to IL_7A0S_072
Geometric discrepancy: 0.1445
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

4TUB|1|YA|C|1934
4TUB|1|YA|G|1935
4TUB|1|YA|A|1936
4TUB|1|YA|A|1937
4TUB|1|YA|A|1938
4TUB|1|YA|U|1939
4TUB|1|YA|U|1940
4TUB|1|YA|C|1941
4TUB|1|YA|C|1942
4TUB|1|YA|U|1943
4TUB|1|YA|U|1944
4TUB|1|YA|G|1945
*
4TUB|1|YA|C|1961
4TUB|1|YA|C|1962
4TUB|1|YA|U|1963
4TUB|1|YA|G|1964

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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