3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
4TUB|1|YA|C|2111, 4TUB|1|YA|G|2112, 4TUB|1|YA|G|2115, 4TUB|1|YA|U|2118
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUB_314 not in the Motif Atlas
Geometric match to IL_5J7L_349
Geometric discrepancy: 0.2332
The information below is about IL_5J7L_349
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

4TUB|1|YA|G|2110
4TUB|1|YA|C|2111
4TUB|1|YA|G|2112
4TUB|1|YA|U|2113
4TUB|1|YA|A|2114
4TUB|1|YA|G|2115
4TUB|1|YA|G|2116
4TUB|1|YA|A|2117
4TUB|1|YA|U|2118
4TUB|1|YA|A|2119
4TUB|1|YA|G|2120
*
4TUB|1|YA|C|2178
4TUB|1|YA|C|2179

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2273 s