IL_4TUB_316

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4TUB|1|YA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_316 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3915

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4TUB|1|YA|C|2129
4TUB|1|YA|U|2130
4TUB|1|YA|G|2131
4TUB|1|YA|U|2132
4TUB|1|YA|G|2133
4TUB|1|YA|A|2134
4TUB|1|YA|A|2135
4TUB|1|YA|C|2136
*
4TUB|1|YA|G|2155
4TUB|1|YA|G|2156
4TUB|1|YA|G|2157
4TUB|1|YA|A|2158
4TUB|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA