3D structure

PDB id
4TUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4TUC|1|XA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUC_201 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1077
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_37722.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
2

Unit IDs

4TUC|1|XA|G|683
4TUC|1|XA|A|684
4TUC|1|XA|G|685
4TUC|1|XA|U|686
4TUC|1|XA|A|687
4TUC|1|XA|G|688
*
4TUC|1|XA|C|699
4TUC|1|XA|G|700
4TUC|1|XA|C|701
4TUC|1|XA|A|702
4TUC|1|XA|G|703
4TUC|1|XA|A|704
4TUC|1|XA|U|705
4TUC|1|XA|A|706
4TUC|1|XA|C|707

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XK
30S ribosomal protein S11
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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