IL_4TUC_222

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUC_222 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1328

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4TUC|1|XA|G|1401
4TUC|1|XA|C|1402
4TUC|1|XA|C|1403
4TUC|1|XA|C|1404
*
4TUC|1|XA|G|1497
4TUC|1|XA|U|1498
4TUC|1|XA|A|1499
4TUC|1|XA|A|1500
4TUC|1|XA|C|1501

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

messenger RNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA