3D structure

PDB id
4TUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUC_332 not in the Motif Atlas
Homologous match to IL_7RQB_104
Geometric discrepancy: 0.1088
The information below is about IL_7RQB_104
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

4TUC|1|YA|C|2680
4TUC|1|YA|C|2681
4TUC|1|YA|U|2682
4TUC|1|YA|C|2683
4TUC|1|YA|U|2684
*
4TUC|1|YA|A|2725
4TUC|1|YA|U|2726
4TUC|1|YA|G|2727

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YE
50S ribosomal protein L3
Chain YO
50S ribosomal protein L14
Chain YR
50S ribosomal protein L17
Chain YT
50S ribosomal protein L19

Coloring options:


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