IL_4TUC_349

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUC_349 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3871

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4TUC|1|RA|G|1855
4TUC|1|RA|G|1856
4TUC|1|RA|G|1857
4TUC|1|RA|G|1858
4TUC|1|RA|A|1859
4TUC|1|RA|G|1860
*
4TUC|1|RA|C|1882
4TUC|1|RA|G|1883
4TUC|1|RA|A|1884
4TUC|1|RA|A|1885
4TUC|1|RA|C|1886
4TUC|1|RA|C|1887

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28