IL_4TUC_373

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4TUC|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUC_373 not in the Motif Atlas

Geometric match to IL_7A0S_043

Geometric discrepancy: 0.3901

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

4TUC|1|YA|C|2129
4TUC|1|YA|U|2130
4TUC|1|YA|G|2131
4TUC|1|YA|U|2132
4TUC|1|YA|G|2133
4TUC|1|YA|A|2134
4TUC|1|YA|A|2135
4TUC|1|YA|C|2136
*
4TUC|1|YA|G|2155
4TUC|1|YA|G|2156
4TUC|1|YA|G|2157
4TUC|1|YA|A|2158
4TUC|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA