IL_4TUD_050

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_050 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1189

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4TUD|1|QA|C|1303
4TUD|1|QA|G|1304
4TUD|1|QA|G|1305
4TUD|1|QA|A|1306
4TUD|1|QA|U|1307
4TUD|1|QA|U|1308
*
4TUD|1|QA|A|1329
4TUD|1|QA|U|1330
4TUD|1|QA|G|1331
4TUD|1|QA|A|1332
4TUD|1|QA|A|1333
4TUD|1|QA|G|1334

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx