IL_4TUD_103

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4TUD|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_103 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1212

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4TUD|1|RA|C|1208
4TUD|1|RA|G|1209
4TUD|1|RA|A|1210
4TUD|1|RA|U|1211
4TUD|1|RA|G|1212
4TUD|1|RA|A|1213
4TUD|1|RA|A|1214
4TUD|1|RA|G|1215
*
4TUD|1|RA|U|1234
4TUD|1|RA|G|1235
4TUD|1|RA|G|1236
4TUD|1|RA|A|1237
4TUD|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20