IL_4TUD_181

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4TUD|1|XA|U|244, 4TUD|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_181 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0708

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4TUD|1|XA|C|242
4TUD|1|XA|A|243
4TUD|1|XA|U|244
4TUD|1|XA|C|245
4TUD|1|XA|A|246
4TUD|1|XA|G|247
*
4TUD|1|XA|C|277
4TUD|1|XA|G|278
4TUD|1|XA|A|279
4TUD|1|XA|C|280
4TUD|1|XA|G|281
4TUD|1|XA|A|282
4TUD|1|XA|C|283
4TUD|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17