IL_4TUD_189

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_189 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1084

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4TUD|1|XA|G|450
4TUD|1|XA|A|451
4TUD|1|XA|A|452
4TUD|1|XA|A|453
4TUD|1|XA|C|454
4TUD|1|XA|C|455
*
4TUD|1|XA|G|477
4TUD|1|XA|A|478
4TUD|1|XA|C|479
4TUD|1|XA|U|480
4TUD|1|XA|G|481
4TUD|1|XA|A|482
4TUD|1|XA|C|483

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16