3D structure

PDB id
4TUD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGCUGAC*GGUGGAG
Length
14 nucleotides
Bulged bases
4TUD|1|YA|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUD_357 not in the Motif Atlas
Homologous match to IL_9DFE_024
Geometric discrepancy: 0.2336
The information below is about IL_9DFE_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68243.1
Basepair signature
cWW-L-cWW-cWW-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4TUD|1|YA|C|844
4TUD|1|YA|G|845
4TUD|1|YA|C|846
4TUD|1|YA|U|847
4TUD|1|YA|G|848
4TUD|1|YA|A|849
4TUD|1|YA|C|850
*
4TUD|1|YA|G|928
4TUD|1|YA|G|929
4TUD|1|YA|U|930
4TUD|1|YA|G|931
4TUD|1|YA|G|932
4TUD|1|YA|A|933
4TUD|1|YA|G|934

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y3
50S ribosomal protein L30

Coloring options:


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