IL_4TUE_052

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_052 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1118

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4TUE|1|QA|G|1401
4TUE|1|QA|C|1402
4TUE|1|QA|C|1403
4TUE|1|QA|C|1404
*
4TUE|1|QA|G|1497
4TUE|1|QA|U|1498
4TUE|1|QA|A|1499
4TUE|1|QA|A|1500
4TUE|1|QA|C|1501

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain QX

messenger RNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA