IL_4TUE_319

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_319 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.391

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4TUE|1|YA|U|2401
4TUE|1|YA|C|2402
4TUE|1|YA|C|2403
*
4TUE|1|YA|G|2414
4TUE|1|YA|G|2415

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15