IL_4TZP_002
3D structure
- PDB id
- 4TZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 8.5 Å
Loop
- Sequence
- CGAUGAG*CGAG
- Length
- 11 nucleotides
- Bulged bases
- 4TZP|1|C|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TZP_002 not in the Motif Atlas
- Geometric match to IL_4LCK_006
- Geometric discrepancy: 0.1456
- The information below is about IL_4LCK_006
- Detailed Annotation
- Kink-turn from T-box riboswitch
- Broad Annotation
- Kink-turn
- Motif group
- IL_51265.4
- Basepair signature
- cWW-L-tSH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4TZP|1|C|C|6
4TZP|1|C|G|7
4TZP|1|C|A|8
4TZP|1|C|U|9
4TZP|1|C|G|10
4TZP|1|C|A|11
4TZP|1|C|G|12
*
4TZP|1|C|C|94
4TZP|1|C|G|95
4TZP|1|C|A|96
4TZP|1|C|G|97
Current chains
- Chain C
- glyQ T-box Stem I
Nearby chains
- Chain A
- Ribosome-associated protein L7Ae-like
Coloring options: