IL_4TZZ_008
3D structure
- PDB id
- 4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UAAGG*CCUUA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: UAAGG,CCUUA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TZZ_008 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3213
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4TZZ|1|F|U|24
4TZZ|1|F|A|25
4TZZ|1|F|A|26
4TZZ|1|F|G|27
4TZZ|1|F|G|28
*
4TZZ|1|F|C|78
4TZZ|1|F|C|79
4TZZ|1|F|U|80
4TZZ|1|F|U|81
4TZZ|1|F|A|82
Current chains
- Chain F
- T-box Stem I RNA
Nearby chains
- Chain E
- Transfer RNA; tRNA
Coloring options: