IL_4TZZ_016
3D structure
- PDB id
- 4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CGAUGAG*CGAG
- Length
- 11 nucleotides
- Bulged bases
- 4TZZ|1|L|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TZZ_016 not in the Motif Atlas
- Geometric match to IL_4LCK_006
- Geometric discrepancy: 0.1418
- The information below is about IL_4LCK_006
- Detailed Annotation
- Kink-turn from T-box riboswitch
- Broad Annotation
- Kink-turn
- Motif group
- IL_51265.3
- Basepair signature
- cWW-tSS-tHS-tSH-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
4TZZ|1|L|C|6
4TZZ|1|L|G|7
4TZZ|1|L|A|8
4TZZ|1|L|U|9
4TZZ|1|L|G|10
4TZZ|1|L|A|11
4TZZ|1|L|G|12
*
4TZZ|1|L|C|94
4TZZ|1|L|G|95
4TZZ|1|L|A|96
4TZZ|1|L|G|97
Current chains
- Chain L
- T-box Stem I RNA
Nearby chains
- Chain C
- T-box leader
- Chain J
- Ribosome-associated protein L7Ae-like
Coloring options: