IL_4U1U_018

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_018 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1077

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4U1U|1|AA|A|371
4U1U|1|AA|C|372
4U1U|1|AA|A|373
4U1U|1|AA|A|374
4U1U|1|AA|U|375
*
4U1U|1|AA|A|389
4U1U|1|AA|U|390

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16