IL_4U1U_149

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGUAGGAUAGGUG*CACCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_149 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3086

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4U1U|1|BA|G|2110
4U1U|1|BA|U|2111
4U1U|1|BA|G|2112
4U1U|1|BA|U|2113
4U1U|1|BA|A|2114
4U1U|1|BA|G|2115
4U1U|1|BA|G|2116
4U1U|1|BA|A|2117
4U1U|1|BA|U|2118
4U1U|1|BA|A|2119
4U1U|1|BA|G|2120
4U1U|1|BA|G|2121
4U1U|1|BA|U|2122
4U1U|1|BA|G|2123
*
4U1U|1|BA|C|2175
4U1U|1|BA|A|2176
4U1U|1|BA|C|2177
4U1U|1|BA|C|2178
4U1U|1|BA|C|2179

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1