IL_4U1U_150

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

4U1U|1|BA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_150 not in the Motif Atlas

Geometric match to IL_5J7L_329

Geometric discrepancy: 0.3312

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4U1U|1|BA|G|2124
4U1U|1|BA|G|2125
4U1U|1|BA|A|2126
4U1U|1|BA|G|2127
4U1U|1|BA|G|2128
*
4U1U|1|BA|C|2160
4U1U|1|BA|C|2161
4U1U|1|BA|G|2162
4U1U|1|BA|A|2163
4U1U|1|BA|C|2164
4U1U|1|BA|C|2165
4U1U|1|BA|U|2166
4U1U|1|BA|U|2167
4U1U|1|BA|G|2168
4U1U|1|BA|A|2169
4U1U|1|BA|A|2170
4U1U|1|BA|A|2171
4U1U|1|BA|U|2172
4U1U|1|BA|A|2173
4U1U|1|BA|C|2174

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1