IL_4U1U_192

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4U1U|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_192 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4U1U|1|CA|G|147
4U1U|1|CA|G|148
4U1U|1|CA|A|149
4U1U|1|CA|U|150
4U1U|1|CA|A|151
4U1U|1|CA|A|152
4U1U|1|CA|C|153
*
4U1U|1|CA|G|168
4U1U|1|CA|C|169
4U1U|1|CA|U|170
4U1U|1|CA|A|171
4U1U|1|CA|A|172
4U1U|1|CA|U|173
4U1U|1|CA|A|174
4U1U|1|CA|C|175

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20