IL_4U1U_206

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4U1U|1|CA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_206 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0777

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4U1U|1|CA|C|569
4U1U|1|CA|G|570
4U1U|1|CA|U|571
4U1U|1|CA|A|572
4U1U|1|CA|A|573
4U1U|1|CA|A|574
4U1U|1|CA|G|575
*
4U1U|1|CA|C|880
4U1U|1|CA|G|881

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17