IL_4U1U_366

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_366 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0652

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U1U|1|BA|U|1851
4U1U|1|BA|U|1852
4U1U|1|BA|A|1853
4U1U|1|BA|A|1854
4U1U|1|BA|U|1855
4U1U|1|BA|U|1856
4U1U|1|BA|G|1857
4U1U|1|BA|A|1858
4U1U|1|BA|U|1859
4U1U|1|BA|G|1860
*
4U1U|1|BA|U|1882
4U1U|1|BA|U|1883
4U1U|1|BA|G|1884
4U1U|1|BA|A|1885
4U1U|1|BA|U|1886
4U1U|1|BA|C|1887
4U1U|1|BA|G|1888
4U1U|1|BA|A|1889
4U1U|1|BA|A|1890
4U1U|1|BA|G|1891

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1