IL_4U1U_371

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUAGAG*UGGAC

Length

11 nucleotides

Bulged bases

4U1U|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_371 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.366

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4U1U|1|CA|G|661
4U1U|1|CA|U|662
4U1U|1|CA|A|663
4U1U|1|CA|G|664
4U1U|1|CA|A|665
4U1U|1|CA|G|666
*
4U1U|1|CA|U|740
4U1U|1|CA|G|741
4U1U|1|CA|G|742
4U1U|1|CA|A|743
4U1U|1|CA|C|744

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CO

30S ribosomal protein S15

Chain CR

30S ribosomal protein S18