IL_4U1V_037

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_037 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.064

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4U1V|1|AA|G|887
4U1V|1|AA|G|888
4U1V|1|AA|A|889
4U1V|1|AA|G|890
4U1V|1|AA|U|891
4U1V|1|AA|A|892
4U1V|1|AA|C|893
4U1V|1|AA|G|894
*
4U1V|1|AA|U|905
4U1V|1|AA|A|906
4U1V|1|AA|A|907
4U1V|1|AA|A|908
4U1V|1|AA|A|909
4U1V|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12