IL_4U1V_045

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4U1V|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_045 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3315

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4U1V|1|AA|C|1051
4U1V|1|AA|U|1052
4U1V|1|AA|G|1053
4U1V|1|AA|C|1054
4U1V|1|AA|A|1055
4U1V|1|AA|U|1056
*
4U1V|1|AA|A|1204
4U1V|1|AA|U|1205
4U1V|1|AA|G|1206
4U1V|1|AA|G|1207

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14