IL_4U1V_056

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4U1V|1|AA|C|1400, 4U1V|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_056 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0806

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4U1V|1|AA|C|1399
4U1V|1|AA|C|1400
4U1V|1|AA|G|1401
*
4U1V|1|AA|C|1501
4U1V|1|AA|A|1502
4U1V|1|AA|A|1503
4U1V|1|AA|G|1504

Current chains

Chain AA

16S rRNA

Nearby chains